Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs113080733 chr3:122484171 C/T 6.25E-6 499 32.1 26.57 20.87 KM Plot
THCA rs11312283 chr6:133117333 CA/C 1.25E-7 486 31.5 32.9 30.53 KM Plot
THCA rs113162447 chr6:133113364 C/CA 1.11E-16 494 31.47 33.7 29.05 KM Plot
THCA rs113185944 chr10:104746374 C/CT 8.02E-14 501 31.15 36.02 32.1 KM Plot
THCA rs11330433 chr16:79271564 GT/G 0 499 31.5 31 28.37 KM Plot
THCA rs113304525 chr10:104842536 G/GTC 7.03E-14 503 31.32 35.08 32.1 KM Plot
THCA rs113320965 chr10:104656315 C/T 7.09E-14 502 31.27 36.17 32.1 KM Plot
THCA rs11333872 chr4:74844556 TA/T 1.18E-5 503 31.6 31.57 23.23 KM Plot
THCA rs113353832 chr6:133139512 GT/G 0 502 31.47 33.7 29.05 KM Plot
THCA rs113375453 chr10:104746468 C/T 7.34E-14 501 31.15 36.17 32.1 KM Plot
THCA rs113430310 chr10:104788826 G/A 7.37E-14 501 31.27 35.87 32.1 KM Plot
THCA rs11346046 chr7:43985242 TA/T 9.93E-6 500 31.27 33.27 32.37 KM Plot
THCA rs113529364 chr3:97317085 C/T 0.000122 502 31.47 31.7 34.07 KM Plot
THCA rs113539171 chr18:13823018 CCCAACCAA/C 1.3E-5 500 31.42 33.53 50 KM Plot
THCA rs113541728 chr10:104716771 A/T 7.53E-14 502 31.03 36.02 32.1 KM Plot